COFFEE
DATA
Last update : 2018/02
Data origin
presentation
Species
BANANA
BREADFRUIT
CITRUS
COCOA
COCONUT
COFFEE
COTTON
OILPALM
RICE
RUBBERTREE
SUGARCANE
updates
staff
links
Study type
Genetic map
Genotypes
Markers
Physical map
QTLs
Study
BAC library
Ccan_888x02183
CoffeaSeqGenomeV1_DH200
Genes
Genetic integrity of wild Coffea canephora
Graziosi µsat
INCO-IQAR
NCBI library
Nestle µsat
Sugars µsat
µsat library
OPERATOR :
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OR
[ Add criterion ]
RESULTS
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Text
Study
BAC library
Genes
Graziosi µsat
NCBI library
Nestle µsat
Sugars µsat
µsat library
Marker type
indel
SSR
SSR_Est
Marker (select item(s) in this list or type string in box below)
GC03_CCoAMT_intron1
GC17_CP26_intron1
GC19_MYB61_5_UTR
GC25_SDD_3_UTR_1
GC32_RBCS_intron1
G_4CL_C2
G_4CL_C5
G_4CL_C6
G_C18332cenar1
G_CFS_1D
G_CWI_SSR01
G_CWI_SSR05
G_KO_C1_2
G_KO_sing2_1
G_NMT_A
G_promSUSY_SSR08
G_promSUSY_SSR09
G_promSUSY_SSR10
G_SUSY2_c6_d
G_SUSY2_SSR03
G_SUSY2_SSR04
G_SUSY2_SSR15
G_SUSY2_SSR16
G_SUSY2_SSR17
G_SUSY_SSR12
G_SUSY_SSR14
Me_BE_62K8_M05
Me_BE_65O2_M01
Me_BE_BAC19_M03
Me_BE_CWI_DL004
Me_BE_CWI_DL011
Me_BE_CWI_DL013
Me_BE_CWI_DL019
Me_BE_CWI_DL031
Me_BE_gA10_DL021
Me_BE_gA10_DL032
Me_BE_gA14_DL002
Me_BE_gA14_DL005
Me_BE_gA14_DL008
Me_BE_gA14_DL024
Me_BE_gA14_DL029
Me_BE_gA71_DL001
Me_BE_gA71_DL003
Me_BE_gA71_DL006
Me_BE_gA71_DL017
Me_BE_gA71_DL020
Me_BE_gA71_DL027
Me_BE_gA71_DL034
Me_BE_INV3_DL016
Me_BE_INV3_DL023
Me_BE_INV3_DL030
Me_BE_INV3_DL035
Me_BE_SPS_M04
Me_BE_SPS_M09
Me_BE_SUSY2_M02
Me_BE_SUSY_DL007
Me_BE_SUSY_DL009
Me_BE_SUSY_DL010
Me_BE_SUSY_DL012
Me_BE_SUSY_DL014
Me_BE_SUSY_DL015
Me_BE_SUSY_DL018
Me_BE_SUSY_DL022
Me_BE_SUSY_DL025
Me_BE_SUSY_DL026
Me_BE_SUSY_DL028
Me_BE_SUSY_DL033
Me_BE_SUSY_M02
Me_ssr119463
Me_ssr119559
Me_ssr119663
Me_ssr119699
Me_ssr119777
Me_ssr119781
Me_ssr119864
Me_ssr119897
Me_ssr119925
Me_ssr120037
Me_ssr120074
Me_ssr120206
Me_ssr120227
Me_ssr120228
Me_ssr120239
Me_ssr120263
Me_ssr120291
Me_ssr120329
Me_ssr120475
Me_ssr120517
Me_ssr120538
Me_ssr120568
Me_ssr120656
Me_ssr120764
Me_ssr120773
Me_ssr120823
Me_ssr120960
Me_ssr121068
Me_ssr121086
Me_ssr121097
Me_ssr121336
Me_ssr121464
Me_ssr121511
Me_ssr121541
Me_ssr121580
Me_ssr121610
Me_ssr121725
Me_ssr121876
Me_ssr121994
Me_ssr122056
Me_ssr122383
Me_ssr122403
Me_ssr122653
Me_ssr122656
Me_ssr122665
Me_ssr122680
Me_ssr122793
Me_ssr122811
Me_ssr122842
Me_ssr122903
Me_ssr122922
Me_ssr123006
Me_ssr123106
Me_ssr123178
Me_ssr123193
Me_ssr123238
Me_ssr123240
Me_ssr123291
Me_ssr123332
Me_ssr123381
Me_ssr123391
Me_ssr123451
Me_ssr123557
Me_ssr123579
Me_ssr123669
Me_ssr123682
Me_ssr123795
Me_ssr123819
Me_ssr123888
Me_ssr123903
Me_ssr123909
Me_ssr123964
Me_ssr124003
Me_ssr124158
Me_ssr124160
Me_ssr124161
Me_ssr124302
Me_ssr124358
Me_ssr124365
Me_ssr124436
Me_ssr124461
Me_ssr124468
Me_ssr124503
Me_ssr124566
Me_ssr124577
Me_ssr124612
Me_ssr124727
Me_ssr124759
Me_ssr124765
Me_ssr124800
Me_ssr124886
Me_ssr124986
Me_ssr125169
Me_ssr125286
Me_ssr125415
Me_ssr125472
Me_ssr125629
Me_ssr125835
Me_ssr125933
Me_ssr125944
Me_ssr126126
Me_ssr126427
Me_ssr126661
Me_ssr126690
Me_ssr126881
Me_ssr126963
Me_ssr127380
Me_ssr127468
Me_ssr127762
Me_ssr128527
Me_ssr128550
Me_ssr128993
Me_ssr129431
Me_ssr129439
Me_ssr129793
Me_ssr129972
Me_ssr130030
Me_ssr130150
Me_ssr130235
Me_ssr130353
Me_ssr130368
Me_ssr130475
Me_ssr130575
Me_ssr130630
Me_ssr130635
Me_ssr130804
Me_ssr131504
Me_ssr131583
Me_ssr131633
Me_ssr131684
Me_ssr131901
Me_ssr132505
Mg_BAC19_M15
Mg_BAC19_M40
Mg_BAC19_M73
Mg_CMA0003
Mg_CMA0007
Mg_CMA0008
Mg_CMA0017
Mg_CMA0018
Mg_CMA0019
Mg_CMA0028
Mg_CMA0031
Mg_CMA0034
Mg_CMA0036
Mg_CMA0041
Mg_CMA0044
Mg_CMA0055
Mg_CMA0075
Mg_M203
Mg_M208
Mg_M257
Mg_M260
Mg_M270
Mg_M273
Mg_M277
Mg_M279
Mg_M300
Mg_M302
Mg_M305
Mg_M306
Mg_M307
Mg_M308
Mg_M309
Mg_M310
Mg_M312
Mg_M313
Mg_M314
Mg_M315
Mg_M316
Mg_M317
Mg_M318
Mg_M320
Mg_M321
Mg_M323
Mg_M324
Mg_M325
Mg_M326
Mg_M327
Mg_M328
Mg_M329
Mg_M330
Mg_M331
Mg_M332
Mg_M333
Mg_M334
Mg_M335
Mg_M336
Mg_M337
Mg_M338
Mg_M339
Mg_M340
Mg_M341
Mg_M342
Mg_M343
Mg_M344
Mg_M345
Mg_M346
Mg_M347
Mg_M348
Mg_M349
Mg_M350
Mg_M351
Mg_M352
Mg_M353
Mg_M354
Mg_M355
Mg_M356
Mg_M357
Mg_M358
Mg_M360
Mg_M361
Mg_M362
Mg_M363
Mg_M364
Mg_M365
Mg_M366
Mg_M367
Mg_M368
Mg_M369
Mg_M370
Mg_M371
Mg_M372
Mg_M373
Mg_M374
Mg_M375
Mg_M377
Mg_M378
Mg_M379
Mg_M380
Mg_M381
Mg_M382
Mg_M383
Mg_M384
Mg_M385
Mg_M386
Mg_M387
Mg_M388
Mg_M389
Mg_M390
Mg_M391
Mg_M392
Mg_M393
Mg_M394
Mg_M395
Mg_M396
Mg_M397
Mg_M398
Mg_M399
Mg_M401
Mg_M402
Mg_M403
Mg_M404
Mg_M405
Mg_M406
Mg_M407
Mg_M408
Mg_M409
Mg_M410
Mg_M411
Mg_M412
Mg_M413
Mg_M414
Mg_M415
Mg_M416
Mg_M417
Mg_M418
Mg_M419
Mg_M420
Mg_M421
Mg_M422
Mg_M423
Mg_M424
Mg_M425
Mg_M426
Mg_M427
Mg_M428
Mg_M429
Mg_M430
Mg_M431
Mg_M432
Mg_M433
Mg_M434
Mg_M435
Mg_M436
Mg_M437
Mg_M438
Mg_M439
Mg_M440
Mg_M441
Mg_M442
Mg_M443
Mg_M444
Mg_M445
Mg_M446
Mg_M447
Mg_M448
Mg_M449
Mg_M450
Mg_M451
Mg_M452
Mg_M453
Mg_M454
Mg_M455
Mg_M456
Mg_M457
Mg_M458
Mg_M459
Mg_M460
Mg_M461
Mg_M462
Mg_M463
Mg_M464
Mg_M465
Mg_M466
Mg_M467
Mg_M468
Mg_M469
Mg_M470
Mg_M471
Mg_M472
Mg_M473
Mg_M474
Mg_M475
Mg_M477
Mg_M478
Mg_M479
Mg_M480
Mg_M481
Mg_M482
Mg_M483
Mg_M484
Mg_M485
Mg_M486
Mg_M488
Mg_M489
Mg_M490
Mg_M491
Mg_M492
Mg_M493
Mg_M494
Mg_M495
Mg_M496
Mg_M497
Mg_M498
Mg_M499
Mg_M500
Mg_M501
Mg_M502
Mg_M503
Mg_M504
Mg_M505
Mg_M506
Mg_M507
Mg_M508
Mg_M509
Mg_M510
Mg_M511
Mg_M512
Mg_M513
Mg_M514
Mg_M515
Mg_M516
Mg_M517
Mg_M518
Mg_M519
Mg_M520
Mg_M521
Mg_M522
Mg_M523
Mg_M524
Mg_M525
Mg_M742
Mg_M745
Mg_M753
Mg_M755
Mg_M767
Mg_M773
Mg_M774
Mg_M779
Mg_M782
Mg_M783
Mg_M784
Mg_M790
Mg_M795
Mg_M804
Mg_M811
Mg_M821
Mg_M825
Mg_M837
Mg_M838
Mg_M840
Mg_M850
Mg_M853
Mg_M859
Mg_M873
Mg_M883
Mg_ssrA20
Mg_ssrA28
Mg_ssrR06
Mg_ssrR103
Mg_ssrR105
Mg_ssrR107
Mg_ssrR108
Mg_ssrR111
Mg_ssrR126
Mg_ssrR127
Mg_ssrR135
Mg_ssrR14
Mg_ssrR148
Mg_ssrR157
Mg_ssrR159
Mg_ssrR162
Mg_ssrR164
Mg_ssrR165
Mg_ssrR168
Mg_ssrR174
Mg_ssrR175
Mg_ssrR189
Mg_ssrR191
Mg_ssrR196
Mg_ssrR20
Mg_ssrR202
Mg_ssrR206
Mg_ssrR209
Mg_ssrR211
Mg_ssrR216
Mg_ssrR220
Mg_ssrR222_A
Mg_ssrR222_B
Mg_ssrR223
Mg_ssrR226
Mg_ssrR250
Mg_ssrR251
Mg_ssrR257
Mg_ssrR26
Mg_ssrR262
Mg_ssrR264
Mg_ssrR268
Mg_ssrR270
Mg_ssrR272
Mg_ssrR278
Mg_ssrR285
Mg_ssrR290
Mg_ssrR301
Mg_ssrR307
Mg_ssrR313
Mg_ssrR325
Mg_ssrR336
Mg_ssrR338
Mg_ssrR34
Mg_ssrR342
Mg_ssrR351
Mg_ssrR354
Mg_ssrR367
Mg_ssrR372
Mg_ssrR378
Mg_ssrR40
Mg_ssrR43
Mg_ssrR776
Mg_ssrS109
Mg_ssrS13
Marker (joker * can be used)
OPERATOR :
AND
OR
[ Add criterion ]
Marker (joker * can be used)
RESULTS
:
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/
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[Export results]
Excel
Text
QTL study
INCO-IQAR
Trait class
Biochemical
Organoleptic
Technological
Yield
Trait
34dCQA
35dCQA
3CQA
4CQA
5CQA
5FQA
Acidity
Bean size
Bitterness
Caffeine
Cumulative yield
Global
Pea berry
Sucrose
Trigonelline
Yield
QTL
34dC_2005_J
35dC_2003_D
35dC_2005_J
3C_2003_B
3C_2003_I
3C_2005_B
3C_2005_I
4C_2003_B
4C_2003_I
4C_2005_A
4C_2005_B
5C_2003_K
5C_2005_B
5F_2003_F
5F_2003_I
5F_2005_A2
5F_2005_B
5F_2005_D
5F_2005_I
AC_2006_B
AC_2006_I
BI_2004_D
BI_2005_I
BI_2006_I
BS_2004_B1
BS_2004_B2
BS_2004_F
BS_2005_A
BS_2005_B
BS_2006_B
BS_2006_D1
BS_2006_D2
BS_2006_D3
BS_2006_F
BS_2006_J
CA_2003_A
CA_2005_C
CA_2005_I
CA_2005_K
CY_2002/6_K
CY_2003/6_K
CY_2004/6_K
GL_2005_H
PB_2004_F
PB_2005_J1
PB_2005_J2
PB_2005_K
PB_2006_F
PB_2006_K
SU_2003_A
SU_2005_I
TR_2003_K
TR_2005_I
Y_2003_D
Y_2006_I1
Y_2006_I2
Y_2006_K
Phenotypic R2 (%)
<=
>=
=
<
>
Map study
Ccan_888x02183
CoffeaSeqGenomeV1_DH200
Linkage group
A
B
C
chr0
chr1
chr10
chr11
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
D
E
F
G
H
I
J
K
QTL inside a segment: segment left limit (bp)
>
QTL inside a segment: segment right limit
<
QTL overlapping a segment: segment left limit (bp)
>
QTL overlapping a segment: segment right limit (bp)
<
OPERATOR :
AND
OR
[ Add criterion ]
Phenotypic R2 (%)
Map study
Linkage group
QTL inside a segment: segment left limit (bp)
QTL inside a segment: segment right limit
QTL overlapping a segment: segment left limit (bp)
QTL overlapping a segment: segment right limit (bp)
RESULTS
:
Page n°
/
Number of records per page
[Export results]
Excel
Text
Map
Ccan_888x02183
CoffeaSeqGenomeV1_DH200
Linkage group
A
B
C
chr0
chr1
chr10
chr11
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
D
E
F
G
H
I
J
K
Map element type
marker
qtl
Map element
34dC_2005_J
35dC_2003_D
35dC_2005_J
3C_2003_B
3C_2003_I
3C_2005_B
3C_2005_I
4C_2003_B
4C_2003_I
4C_2005_A
4C_2005_B
5C_2003_K
5C_2005_B
5F_2003_F
5F_2003_I
5F_2005_A2
5F_2005_B
5F_2005_D
5F_2005_I
AC_2006_B
AC_2006_I
BI_2004_D
BI_2005_I
BI_2006_I
BS_2004_B1
BS_2004_B2
BS_2004_F
BS_2005_A
BS_2005_B
BS_2006_B
BS_2006_D1
BS_2006_D2
BS_2006_D3
BS_2006_F
BS_2006_J
CA_2003_A
CA_2005_C
CA_2005_I
CA_2005_K
CY_2002/6_K
CY_2003/6_K
CY_2004/6_K
GC03_CCoAMT_intron1
GC17_CP26_intron1
GC19_MYB61_5_UTR
GC25_SDD_3_UTR_1
GC32_RBCS_intron1
GL_2005_H
G_4CL_C2
G_4CL_C5
G_4CL_C6
G_C18332cenar1
G_C18332cenar1_a
G_C18332cenar1_b
G_CFS_1D
G_CFS_1D_a
G_CFS_1D_b
G_CFS_1D_c
G_CWI_SSR01
G_CWI_SSR05
G_KO_C1_2
G_KO_sing2_1
G_NMT_A
G_promSUSY_SSR08
G_promSUSY_SSR09
G_SUSY2_c6_d
G_SUSY_SSR12
G_SUSY_SSR14
Me_BE_62K8_M05
Me_BE_65O2_M01
Me_BE_BAC19_M03
Me_BE_CWI_DL004
Me_BE_CWI_DL011
Me_BE_CWI_DL013
Me_BE_CWI_DL031
Me_BE_gA10_DL021
Me_BE_gA10_DL032
Me_BE_gA71_DL003
Me_BE_gA71_DL020
Me_BE_INV3_DL030
Me_BE_SPS_M04
Me_BE_SPS_M09
Me_BE_SUSY2_M02
Me_BE_SUSY_DL007
Me_BE_SUSY_DL010
Me_BE_SUSY_DL018
Me_BE_SUSY_DL025
Me_BE_SUSY_DL026
Me_BE_SUSY_DL028
Me_BE_SUSY_M02
Me_ssr119463
Me_ssr119559
Me_ssr120037
Me_ssr120074
Me_ssr120206
Me_ssr120239
Me_ssr120263
Me_ssr120263_a
Me_ssr120263_b
Me_ssr120291
Me_ssr120329
Me_ssr120329_a
Me_ssr120329_b
Me_ssr120538
Me_ssr121086
Me_ssr121097
Me_ssr121336
Me_ssr121876
Me_ssr122056
Me_ssr122383
Me_ssr122403
Me_ssr122656
Me_ssr122680
Me_ssr122793
Me_ssr123106
Me_ssr123238
Me_ssr123332
Me_ssr123579
Me_ssr123669
Me_ssr123669_a
Me_ssr123669_b
Me_ssr123669_c
Me_ssr123669_d
Me_ssr123669_e
Me_ssr123669_f
Me_ssr123682
Me_ssr123795
Me_ssr123888
Me_ssr123964
Me_ssr124358
Me_ssr124365
Me_ssr124468
Me_ssr124503
Me_ssr124612
Me_ssr124727
Me_ssr124765
Me_ssr124886
Me_ssr124986
Me_ssr125629
Me_ssr125933
Me_ssr125944
Me_ssr127380
Me_ssr127762
Me_ssr129793
Me_ssr129793_a
Me_ssr129793_b
Me_ssr131504
Me_ssr131583
Me_ssr131684
Mg_BAC19_M15
Mg_BAC19_M40
Mg_BAC19_M73
Mg_CMA0003
Mg_CMA0007
Mg_CMA0008
Mg_CMA0017
Mg_CMA0018
Mg_CMA0019
Mg_CMA0028
Mg_CMA0031
Mg_CMA0034
Mg_CMA0036
Mg_CMA0041
Mg_CMA0044
Mg_CMA0055
Mg_CMA0075
Mg_M203
Mg_M208
Mg_M257
Mg_M260
Mg_M270
Mg_M273
Mg_M277
Mg_M277_a
Mg_M277_b
Mg_M279
Mg_M300
Mg_M300_a
Mg_M300_b
Mg_M300_c
Mg_M302
Mg_M305
Mg_M309
Mg_M313
Mg_M314
Mg_M315
Mg_M327
Mg_M328
Mg_M329
Mg_M331
Mg_M334
Mg_M337
Mg_M338
Mg_M341
Mg_M344
Mg_M350
Mg_M351
Mg_M353
Mg_M355
Mg_M358
Mg_M360
Mg_M361
Mg_M362
Mg_M364
Mg_M367
Mg_M368
Mg_M371
Mg_M373
Mg_M378
Mg_M379
Mg_M381
Mg_M383
Mg_M384
Mg_M388
Mg_M392
Mg_M394
Mg_M395
Mg_M398
Mg_M402
Mg_M403
Mg_M404
Mg_M414
Mg_M416
Mg_M418
Mg_M429
Mg_M441
Mg_M443
Mg_M445
Mg_M446
Mg_M448
Mg_M456
Mg_M457
Mg_M460
Mg_M461
Mg_M468
Mg_M471
Mg_M472
Mg_M473
Mg_M477
Mg_M478
Mg_M486
Mg_M486_a
Mg_M486_b
Mg_M488
Mg_M491
Mg_M492
Mg_M492_a
Mg_M492_b
Mg_M495
Mg_M500
Mg_M501
Mg_M507
Mg_M509
Mg_M518
Mg_M521
Mg_M742
Mg_M745
Mg_M753
Mg_M755
Mg_M767
Mg_M773
Mg_M773_a
Mg_M773_b
Mg_M774
Mg_M779
Mg_M782
Mg_M783
Mg_M784
Mg_M790
Mg_M795
Mg_M804
Mg_M811
Mg_M821
Mg_M825
Mg_M837
Mg_M838
Mg_M840
Mg_M850
Mg_M853
Mg_M859
Mg_M873
Mg_M883
Mg_ssrA20
Mg_ssrR06
Mg_ssrR105
Mg_ssrR108
Mg_ssrR111
Mg_ssrR126
Mg_ssrR127
Mg_ssrR14
Mg_ssrR157
Mg_ssrR159
Mg_ssrR196
Mg_ssrR20
Mg_ssrR220
Mg_ssrR222_A
Mg_ssrR226
Mg_ssrR250
Mg_ssrR251
Mg_ssrR257
Mg_ssrR270
Mg_ssrR270_a
Mg_ssrR270_b
Mg_ssrR278
Mg_ssrR290
Mg_ssrR290_a
Mg_ssrR290_b
Mg_ssrR313
Mg_ssrR338
Mg_ssrR342
Mg_ssrR372
Mg_ssrR40
Mg_ssrR776
PB_2004_F
PB_2005_J1
PB_2005_J2
PB_2005_K
PB_2006_F
PB_2006_K
SU_2003_A
SU_2005_I
TR_2003_K
TR_2005_I
Y_2003_D
Y_2006_I1
Y_2006_I2
Y_2006_K
Mapped elements inside a segment: segment left limit (cM)
<=
>=
=
<
>
Mapped elements inside a segment: segment right limit (cM)
<=
>=
=
<
>
OPERATOR :
AND
OR
[ Add criterion ]
Map
Linkage group
Map element type
Map element
Mapped elements inside a segment: segment left limit (cM)
Mapped elements inside a segment: segment right limit (cM)
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